PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG394200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 255aa    MW: 27123.8 Da    PI: 8.4711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG394200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11135182455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Pavir.5NG394200.1.p 135 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 182
                          8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.77E-18129197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-12129186No hitNo description
PROSITE profilePS5088816.406131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-18131199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-9135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDPAPAVAAE LWRPPHLAAG GGRAVEATSA VTEKSSGGRG GGSAGRRRQR ETPSSEDDSS  60
RNVSTSGGGG QDLTDSGAKR FKSNKSNDNN GNLRTEAETD SRSAGKAVSK NSPAPEPPKQ  120
DYIHVRARRG QATDSHSLAE RARREKISER MKVLQDLVPG CNKVIGKASV LDEIINYIQS  180
LQCQVEFLSM KLEAVNAHAS NGVEAFPCKD FASQTYSTAP GLTFDTQTPR EYGQGASTSE  240
WLHMQTGGAY ERVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.414620.0callus| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981383.11e-159PREDICTED: transcription factor bHLH79
SwissprotQ9LV171e-57BH079_ARATH; Transcription factor bHLH79
TrEMBLK4AE241e-159K4AE24_SETIT; Uncharacterized protein
STRINGSi037131m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-67BIG PETAL P